Perl script to count number of Ns in a multifasta file !
...647429 scaffold2_size10632363 10632363 64900 0.00614149299600103 scaffold3_size10490233 10490233 14872 0...8018833028 scaffold29_size889417 889417 33420 0.0390421929048817 scaffold30_size864014 864014 80076 0.10...2127 days ago
2082 days ago
Installing Busco version 4.0.6
...nda r-assertthat-0.2.1 | r36h6115d3f_2 70 KB conda-forg...MB r-callr-3.4.3 | r36h6115d3f_1 392 KB conda-forg...conda-forge/noarch::r-assertthat-0.2.1-r36h6115d3f_2 r-backports cond...1436 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent...2036 days ago
2002 days ago
Installing Platypus on Ubuntu !
...install Cython Collecting Cython Downloading https://files.pythonhosted.org/packages/85/29/ccdbce68ba5fb97fd11c08e3cc79576f13e6e300d32a7953cd4c878c0996/Cython-0.29...2002 days ago
Palindrome Simulation commands !
...utant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=mutant153CH101.fasta id=97 3317 history > allCommands 3318 cat ch101_read33155_template_pass_FAH31515.fa...1719 days ago
Bash commandline to install Anaconda !
...installing: jeepney-0.4-py37_0 ... installing: kiwisolver-1.0.1-py37hf484d3e_0 ... installing: lazy-obje...stalling: simplegeneric-0.8.1-py37_2 ... installing: sip-4.19.8-py37hf484d3e_0 ... installing: six-1.12....1538 days ago
Bash command to install GATK, Bedtools and SnpEff !
...sertthat-0.2.1 | r36h6115d3f_0 74 KB r-bito...i-1.1.0 | r36h6115d3f_0 189 KB r-colo...beling-0.3 | r36h6115d3f_4 71 KB r-latt.../noarch::r-assertthat-0.2.1-r36h6115d3f_0 r-bitops pkgs...1538 days ago
1508 days ago