Results for "data"

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  • Awk

    Awk

    Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner. Useful Weblinks: http://www.grymoire.com/Unix/Awk.html http://www.hcs.harvard.edu/~dholland/computers/awk.html http://www.pement.org/awk/awk1line.tx...

    Tags: awk, gawk, nawk, sed, data, sequencing, one liner

    1506 days ago

  • http://sourceforge.net/projects/bio2rdf/ #App #Semantic #medical #data

    Tags: App, Semantic, medical, data

    1190 days ago

  • http://ropensci.org/packages/ #data #Viz

    Tags: data, Viz

    1190 days ago

  • http://gigadb.org/dataset/100102 #Nanopre #MinION #data

    Tags: Nanopre, MinION, data

    1095 days ago

  • https://github.com/itmat/rum/wiki/About-RUM #RNA #Seq #data

    Tags: RNA, Seq, data

    993 days ago

  • #Bioinformatics, #R, #Genomics and #big #data #tutorial https://bioconductor.org/help/course-materials/

    Tags: Bioinformatics, R, Genomics, big, data, tutorial

    647 days ago

  • HTSeq: Analysing high-throughput sequencing data with Python

    Overview Paper Documentation overview Author License Prequisites and installation Installation on Linux Installation on MacOS X MS Windows A tour through HTSeq Reading in reads Reading and writing BAM files Genomic intervals and genomic arrays Counting reads by gene...

    Tags: HTSeq, Analysing, high-throughput, sequencing, data, Python

    41 days ago

  • Qualimap: Evaluating next generation sequencing alignment data

    Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments i...

    Tags: Qualimap, Evaluating, ngs, sequencing, alignment, data

    40 days ago

  • Salmon: A tool for quantifying the expression of transcripts using RNA-seq data.

    Salmon is a tool for quantifying the expression of transcripts using RNA-seq data. Salmon uses new algorithms (specifically, coupling the concept of quasi-mapping with a two-phase inference procedure) to provide accurate expression estimates very quickly (i.e. wicked-fast) and whil...

    Tags: Salmon, tool, quantifying, expression, transcripts, RNA-seq, data

    35 days ago

  • Single Cell RNAseq data analysis

    The ability to derive genome-wide mRNA expression data from a population of cells has proven useful in thousands of studies over the past two decades. In spite of their utility, traditional expression experiments are limited to providing measurements that are averaged over thousands of cells, whi...

    Tags: Single, Cell, RNAseq, data, analysis

    20 days ago