Results for "data visualization"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl module...use "yum" for the rescue. Dont worry biological data cruncher, this is true we are...scanning (atstart or never)? [atstart]Cache metadata (yes/no)...3933 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a...3933 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3928 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understan...background of software/tool to better explain the data computat...
3927 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did...3935 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha hel...re topology for 77% of the sequences in a standard dataset of 86 proteins with superv...tlab Conclusion/Implementation: Here discriminant data mining a...3927 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used...t to Bio-informatics work that is math heavy and deals with a large amount of data.3934 days ago
- The key to finding a solution is to notice that most genomicsequences differ by...s increasing rapidly, but the actual amount of new data is very small. In other words...edia.org/wiki/Compression_of_Genomic_Re-Sequencing_Data http://...
3902 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer dow...Access), allowing you to fetch public databases like GenBank, EMBL or Sw...genetics and molecular evolution Data structure and IO Phylogeneti...ks with Function objects).Statistics: DataTable obj...3930 days ago
- I found several useful bioinformatics articles which exaplain, define an...ates. Elementary Sequence Analysis - Database Searching by B. Gold...sion. Protein Sequence Alignment and Database Scanning Geoff Barto...p;Bio-IT World , Dec. 10, 2002. Data stored i...
3904 days ago
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Top-level pages
- ...f large amounts of biological data, using networks of computers and databases." - from the glossary fo...medical, behavioral or health data, including those to acquire,...g biological laws solely from data analysis by induction (e.g. A...ctures are stored in specific databases (for example, the Protei...
3930 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increas...n answer. This is exploratory data analysis, one of the most dif...ustrating positions to be in. Data mining is a huge field and ca...covering hidden value in your data warehous...
3929 days ago
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Wire posts
News
- InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante. http://www.interpretomics.co/
3902 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This al...3922 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a netwo...lyze Next Generation Sequencing (NGS) data analysis. In the context of a...rder to ensure compliance of produced datasets with pipelines requiremen...ional facilities and expertise in NGS data analysis...3931 days ago
- van Noort Group is looking for PhD fellows We currently access an unp...nologies produce large amounts of raw data that can be transformed into...from the growing amount of biological data becoming available and turn b...e based on a combination of published data. An impo...
3931 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which...ng in human disease. Research Area: Analysis of Next Generation sequence data in cance...
3930 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of...l and biological backgrounds. Research Area: Linear models for microarray data Digital...
3930 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like thi...Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Sear...3901 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the...es. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank...3703 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday, February 01,...onential increase in genomic and biomedical data, which will soon outstrip adv.... Extracting new science from these massive datasets will...3885 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a...to certain lifestyle-related diseases, by understanding their personal genome data. So, I t...3899 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1199 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has...d().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.j...1119 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome proj...ics provides the tools to analyse and exploit such data sets.Can...3399 days ago
At what age did you gain passion in Bioinformatics?
Most of the bioinformatician were biologist ( yeah ... not all ;), and at later stage they gain a passion in Bioinformatics and learn it. When did you get inclined towards computational analysis of biological data?3221 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of G...ting the globally produced biological data to derivate unified solutions...rison of high-throughput experimental data in an integrated manner and b...m? With the increasing amount of data in datab...2344 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It prov...3886 days ago
R is a free software programming language and a software environment for sta...ge is widely used among statisticians and data miners for developing statistical software and data analysis. R's popularity has...comprehension of high-throughput genomic data. Biocond...3933 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...tive diagram (see section "d3" visualization"). The blocks are al...Circos" (see section "Circos" visualization"). While "Circos" is better f...orary files and store all it's data in RAM. Output description =======..."blocks_sequences.sam". "d3" visualization ------------------ File nam...1267 days ago
- ...t generation sequencing (NGS) data, consisting of both raw reads...two-column, plain text file). Visualization can be performed by...R scripts can also be used to visualization. SAMStat SAMStat i...supports Ion Torrent and 454 data. Trim galore! Trim_galore i...
2120 days ago
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