Results for "datasets"
Top-level pages
...A sequence and a computer program (it can be shown that the DNA represents a Turing Machine). Analyses in bioinformatics focus on three types of datasets: genome sequences, macromolec...3938 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...rror correction of high-throughput sequencing datasets with non-uniform coverage. Me...Geoseq: a tool for dissecting deep-sequencing datasets. Gurtowski et al, BMC Bioinfo...of R and Bioconductor for analysis of genomic datasets, available at R and Bioconduc...3770 days ago
List of bioinformatics open source projects/software.
...on database InterMine http://intermine.github.io/intermine.org/ Extensive data warehouse system for the analysis and integration of biological datasets Java Treeview http://jtreev...3747 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...n individual based model intended to simulate datasets under a very broad range of c...simulator for the simulation of case control datasets at SNP markers https://mathge...e replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net/...3727 days ago
List of In-silico Binding Site Prediction Tools
...: LIGSITEcs, PASS, Q-SiteFinder, and SURFNET are combined together to improve the prediction success rate. All these methods are evaluated on two datasets of 48 unbound/bound structure...3734 days ago
Comprehensive list of visualization tools for biological pathways
...biomolecular data. Visualization of interdependencies between multiple datasets http://www.caleydo.org/ Cel...e.org/data/marray/ MapMan User-driven tool that displays large datasets onto diagrams of metabolic pa...2277 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...dules (kissnp2 and kissreads) Input: raw NGS datasets; fasta, fastq, gzipped or not...heterogeneity from high-throughput sequencing datasets; calls variants found in <...elationships; “There are four different datasets: training, validation, testin...2899 days ago
Genome Assembly Tools and Software - PART1 !!
...idual sequencing technologies. It can combine datasets produced by different technol...communities. However, assembling metagenomic datasets has proven to be computationa...oting assembly problems, and it handles large datasets. CLC Genomics Workbench...2676 days ago
- ...e if(NR%4==2) print;}' > file.fa FASTX-toolkit fastq_to_fasta is available in the FASTX-toolkit that scales really well with the huge datasets fastq_to_fasta -h usage: fa...
2296 days ago
List of visualization tools for genome alignments
...tware for annotating and visualizing sequenced human genomes http://www.svaproject.org Viewer (IGV) Visualization of large heterogeneous datasets, providing a smooth and intui...2274 days ago
