Results for "datasets"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...iuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool for defining HSBs using datasets that may contain minor errors...2591 days ago
Computer simulation of genetic mechanism !!
...n individual based model intended to simulate datasets under a very broad range of c...simulator for the simulation of case control datasets at SNP markers https://mathge...e replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net/...2956 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3926 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background of...
3926 days ago
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Files
- ...tagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clusters from whole-genome sequencing and metagenomic datasets.
805 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference g...computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to p...2667 days ago
Awesome perl frameworks, libraries and software - PART 4
...s a suite of tools for parsing, analyzing, and graphing logs and other datasets. schweikert/postgrey -...amework datameet/india-election-data - To map publicly available datasets related to General Assembly (...2475 days ago
Top-level pages
- ...A sequence and a computer program (it can be shown that the DNA represents a Turing Machine). Analyses in bioinformatics focus on three types of datasets: genome sequences, macromolec...
3928 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...rror correction of high-throughput sequencing datasets with non-uniform coverage. Me...Geoseq: a tool for dissecting deep-sequencing datasets. Gurtowski et al, BMC Bioinfo...of R and Bioconductor for analysis of genomic datasets, available at R and Bioconduc...3760 days ago
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Wire posts
News
- Dr Eric Londin, Assistant Professor, Thomas Jefferson University, USA, stated that analysis of 44 exome datasets from four different testing kits showed that they missed a high proport...
3606 days ago
- ...on heterozygous SNPs, multi-nucleotide polymorphisms (MNPs) and insertion-deletions (InDels). Multi-omic integration of datasets shows related attributes from different datasets in a biologically meaningful...
2344 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...nformatician will therefore also have to provide researchers with advices on their experimental designs in order to ensure compliance of produced datasets with pipelines requirements....3930 days ago
- ...aimed at establishing biomarker-based strategies for high throughput diagnostic screening. Key tasks will involve multivariate analysis of large datasets, bioinformatic-based selectio...
3834 days ago
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ResearchLabs posts
- ...etween biology, statistics and computer science to address questions of outstanding biological importance through intrepretation of large genetic datasets. Profile: Associate Profe...
3855 days ago
- ...igenetics and technological and informatics aspects. The group is both computational and experimental. We ask biological questions to large datasets made using novel genomics tec...
3849 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...ical data, which will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster...3883 days ago
Critical to discoveries in bioinformatics
EMBL-EBI distributes datasets worldwide using the Janet network. This biological data enables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. The...3774 days ago
Bio-Scripts
Installing ggplot2 and its dependencies on Ubuntu !
...-o colorspace.so colorspace.o init.o -L/usr/lib/R/lib -lR installing to /usr/local/lib/R/site-library/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** i...1531 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get...1523 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...cs company will be developing effective tools to eliminate manipulated datasets and information that exist in the literature and provide trustworthy clean information/datasets for researchers. How muc...2343 days ago
Tags
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in output for easy plotting. gcp: K-mer GC Pr...Tags: KAT, K-mer, analysis, toolkit, quality, control, NGS, datasets, genome, assemblies
1963 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of the Genscale team at Inria. Contact: claire dot lemaitre at i...Tags: Simka, SimkaMin, comparative, metagenomics, method, dedicated, NGS, datasets
1746 days ago
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Comments
Comment on "CovCal: Coverage / Read Count Calculator"
...er of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when you are simulating datasets. The coverage equation is def...564 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
...(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd...mat 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd...(base) [jnarayan@hn1 TOOLS]$ chmod +x datasets dataformat...861 days ago
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