Results for "de novo"
Top-level pages
Bioinformatics Companies in India
...o Park, Basavangudi, Bangalore – 4www.molecularconnections.com 22.Novo Informatics Pvt. Ltd.TBIU, 2n...lhi-16.Contact: 91-11-26581524, 91-11-26581766(Extension: 28)Email: info@novoinformatics.comwww.novoinforma...3911 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...t al., Bioinformatics 27(13):i137-41, 2011. PubMedCentral De novo assembly Velvet: algorithms for de novo short read assembly using de...Full Text Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping...3764 days ago
Commercial and public next-gen-seq (NGS) software
...Can use a hybrid templated/de novo approach. Commercial. Win or...land, USA. POSIX OS required. Novocraft - Tools for reference al...duces results very similar to novocraft's.SOCS (short oligonucle...A-Seq short reads to build de novo gene models. First, candidate...3504 days ago
Software packages for next gen sequence analysis
...Can use a hybrid templated/de novo approach. Commercial. Win or...nd, USA. POSIX OS required. * Novocraft - Tools for reference al...Illumina and SOLiD data. De novo Align/Assemble * ABySS - Asse...A-Seq short reads to build de novo gene models. First, candidate...3227 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...lude: reference-guided and de novo genome and transcriptome asse...earches graphs produced by de novo assembler Cortex; c++ source...on: calls SNVs and detects de novo point mutations in families...nant, autosomal recessive, de novo mutations and a general model...2894 days ago
Genome Assembly Tools and Software - PART1 !!
...tes iterative, reference guided de novo assemblies with the intent of...acker 1.1 – Packing-Based De Novo Transcriptome Assembly from R...e. Rnnotator 3.5.0 – de novo Transcriptome Assembly pipeli...Combines multiple Whole Genome de novo Assemblies into a combined Co...2671 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...detector (uses the concept of “minimazers”, a special type of k-mers) Software (C) https://github.com/lh3/minimap Assembly De novo genome assembly MHAP Produc...2356 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly...2315 days ago
Some useful Bioinformatics links
...tech.com/taxonomy/term/131 De novo long-read assembly of a compl...osome-scale scaffolding of de novo genome assemblies based on ch...t-version lh3/fermi: A WGS de novo assembler based on the FMD-in...bacterial genome assembled de novo using only nanopore sequencin...2226 days ago
Gap filling or Contigs extensions tools !
...orm gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the...at the IMAGE tool: http://genomebiology.com/2010/11/4/R41 Also SOAPdenovo has ha function for scaffoldi...2150 days ago
