Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge a...analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3692 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two da...on process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chro...3537 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3895 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tu...cument/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbial de novo Assembly for Illumina Data Introductor...3472 days ago
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour w...ated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file...3774 days ago
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Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-contest-prompts-soul-searchin...3904 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a...l features that would otherwise require the use of Assembly Language. As Dennis Ritchie...plementation language efficient enough to displace assembly language, yet sufficiently ab...3932 days ago
Genome Assembly Tools and Software - PART2 !!
...and removes them prior to the assembly. The established software Phr...nbsp;is a method for accurate assembly of a heterogeneous viral popu...ntial to perform high-quality de-novo assembly of large genomes in r...o use for your Velvet de novo assembly. It needs two inputs: the est...2670 days ago
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Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
New advances in biology are being made at a rapidly increasing pace, largely due to new technologies and a large am...expected to revolutionize area of life sciences. A number of new methods like de-novo...3829 days ago
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Bioinformatics JRF/SRF position at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 App...ogramming language, perl and database – HTML, CSS, Java script. NGS sequence assembly and analysis and algorithm de...3516 days ago
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How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly...htly packed up to fit into the nucleus of every cell. The process starts with assembly of a nucleosome, which is for...3861 days ago
Download the genome from NCBI using bash script/command
...d genome # Look for genome assembly summary and extract the URL....nih.gov/genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"}....gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"}...h.gov/genomes/refseq/protozoa/assembly_summary.txt' | awk '{FS="\t"}...2517 days ago
Download the gff files from NCBI using bash script/command
...nome_gff # Look for genome assembly summary and extract the URL....nih.gov/genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"}....gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"}...h.gov/genomes/refseq/protozoa/assembly_summary.txt' | awk '{FS="\t"}...2508 days ago
Which of the following programming language is best for a bioinformatics beginner?
...h work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and...3515 days ago
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Tags: Sequencing, DNA-Seq, RNA-Seq, MACE, Epigenetics, microRNA, Chip-Seq, RAD-Seq, Methylation-Seq, transcriptomics, GBS, Gene expression, de-novo assembly, breeding, Exome Seq, Rare variants
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Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructin...software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Quality co...repeated until a satisfactory assembly is achieved. These are t...400 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg g...er) is a popular tool for short-read assembly. It can assemble reads genera...of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes...vides several options for tuning the assembly parameters, such as adjusting...405 days ago