Results for "developed"

Top-level pages

  • Tools for bacterial whole genome annotation

    ...ion sequences, transposons and other mobile elements. PGAP: NCBI has developed an automatic prokaryotic geno...Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced wit...

    37 days ago

  • SLURM basics !

    SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of th...

    620 days ago

  • Genomics for Bioinformatician

    ...MM A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes....regions. Glimmer M A gene finder derived from Glimmer, but developed specifically for eukaryotes....

    1648 days ago

  • Edit distance application in bioinformatics !

    ...tical). Apparently based on edit distance. Text::Dice calculates Dice's coefficient for two strings. This formula was originally developed to measure the similarity of...

    47 days ago

  • Bioinformatics Definitions

    ...techniques and algorithms were specifically developed for the analysis of biologica...with each other. Special languages have been developed to facilitate this task (such...ches for automated data harvesting are being developed. Structure classification sch...

    1653 days ago

  • Software packages for next gen sequence analysis

    ...ram) for mRNA and EST Sequences. Developed by Thomas Wu and Colin Watana...alization tools. Version 3.0 was developed by Stefan Kurtz, Adam Phillip...carry out post-analysis. ZOOM is developed to be highly accurate, flexib...NA-Seq Analysis Tools. RNASAT is developed and maintained by Hui Jiang a...

    948 days ago

  • Commercial and public next-gen-seq (NGS) software

    ...ignment Program) for mRNA and EST Sequences. Developed by Thomas Wu and Colin Watana...on, and visualization tools. Version 3.0 was developed by Stefan Kurtz, Adam Phillip...Need about 20-25X coverage and paired reads. Developed by Daniel Zerbino and Ewan Bi...

    1225 days ago

  • List of In-silico Binding Site Prediction Tools

    ...f ligand-binding sites have been developed in recent decades. Here we pr...ers of residues. PocketQuery was developed by David Koes from the Camach...e prediction algorithms. We have developed a new method PocketDepth, for...vol/mcvol  This program was developed to integrate the molecular vo...

    1450 days ago

  • NGS Glossary !!

    ...s, and probabilities associated with specific genotypes. The name Phred refers to the original Phred base-calling software, which first used and developed the scale. Phred quality sco...

    575 days ago

  • Next generation sequencing in R or bioconductor environment

    ...s a ranked list of genomic regions as input and outputs short DNA sequences that are overrepresented in some part of the list. The algorithm was developed for detecting transcription f...

    1330 days ago