CABOG: Celera Assembler with Best Overlap Graph
...genomes such as bacterial as well as large genomes such as mammalian. CABOG is an extension of the Celera Assembler software that was originally developed at Celera for the 2...2531 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...insertion sequences, transposons and other mobile elements. NCBI has developed an automatic prokaryotic geno...Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced wit...2529 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...ulations indicate that our results are reasonably accurate and that they will become highly accurate in the foreseeable future. Our methods were developed as part of a project to recon...2528 days ago
2525 days ago
AVID: A Global Alignment Program
...representation of alignments and methods for their comparison. These formats and methods should be useful for future studies. The tools we have developed for the alignment comparisons...2522 days ago
2489 days ago
GeneProf: analysis of high-throughput sequencing experiment
...') and data from GeneProf may be used externally (cp. Section 'Web API: Retrieving Data from ..'). GeneProf is academic software developed at the Centre for Regene...2479 days ago
2474 days ago
QuorUM: An Error Corrector for Illumina Reads
...m “error correction” to denote the reduction in errors due to both changes in individual bases and trimming of unusable sequence. We developed an error correction software...2353 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line...2347 days ago