Results for "differential expression"
Users
About me: ...hotgun sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcriptome assembly, and differential expression analysis, and developing pipe...1130 days ago
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse...In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project o...3941 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes...logy (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis...3700 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3940 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3936 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3943 days ago
- Liver cancer is third leading cause of deaths and fourth most...RNA is small RNA molecules known to inhibit mRNA expression of particular gene by binding...his region become hyper-methylated thats prevent expression of host gene. Thus , integrat...
3551 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3935 days ago
Pages
- I found several useful bioinformatics articles which exaplain...sp; Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Mac...3. Computational Analysis of Complexity in Gene Expression Arrays Building your own Bio...
3911 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of s...mble transcripts and estimate their expression levels from RNA-Seq reads. C...Transcriptome Assembly and Isoform Expression Level Estimation from Biased...genome, across a broad spectrum of expression values and in presence of alt...2676 days ago
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Top-level pages
- "Bioinformatics is a science of biological predi...l and spatial organisation of their expression in the cell encoded by the DN...nctional genomics experiments (e.g. expression data, yeast two–hybrid...but also sequences regulating gene expression. A comparison of the genomes...
3937 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data m...d?doi=10.1.1.106.385&rep=rep1&type=pdf Towards knowledge-based gene expression data mining: http://www....
3936 days ago
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Wire posts
News
R package for visualising GO enrichment
...louds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each...3930 days ago
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes t...opments in understanding chromatin structure and function, particularly gene expression and genome integrity.This mee...3915 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laborato...ablish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3939 days ago
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers Uni...t generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have s...3938 days ago
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ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3938 days ago
- Statistical functional genomics in experimental medicine The genome projects and the acc...kgrounds. Research Area: Linear models for microarray data Digital gene expression technologies Detection of mo...
3938 days ago
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Video
May 17, 2013 - Differential Network Analysis
Steve Horvath presents Differential Network Analysis at the UCLA Human Genetics/Biostatistics Network Course3886 days ago
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types use...etter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3885 days ago
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Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2907 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of inp...extract the two values or columns with a regular expression # A group of letters and a...quence in segments of length # three, a regular expression will be used searching for al...2145 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programm...ftware. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3521 days ago
Groups
This group is being designed to cover some of the common algorithms underlying the follow...otein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary tr...3892 days ago
Tags
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional and post-transcription levels. Here are some important DBs and tools related with miRNA: miRNA Sequencing data a...
Tags: Sequencing, gene expression, differential expression, transcription, UTRs, Animal, plant and virus miRNA
3486 days ago
Comments
Comment on "Tools for Differential expression analysis"
Differential expression analysis is a widely used techn...ools available for performing differential expression analysis, including: DESeq...ting variance and testing for differential expression. edgeR: Another R packag...411 days ago
Comment on "Running Trinity on RNA-seq !"
.... This is a prerequisite to many other analyses such as examining differentially expressed transcripts among...account for them in your further data explorations. Perform differential expression analysis. Trinity provides di...2113 days ago
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