Results for "discordant reads"
Blogs
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of...A tool to generate collections of synthetic reads that reflect the diverse taxo...pIRS Profile-based Illumina pair-end reads simulator https://code.google...2960 days ago
- Abstract: Genetic testing requires screening of the entire gene, which by conventional...analysis with stringent filtering to eliminate false positive and low quality reads. This simplifies the analysis...
2788 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amoun...eration sequencing data (paired end mapping, split reads, and depth of coverage), arra...reakSeq, structural variant genotyping using split reads Link CopySeq, genot...2687 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable dise...s designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp...ra-read discordance and soft-clipped tails of long reads to identify structural varian...2593 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is a...hase corrects base calling errors in the reads. The second phase assembles contigs from the corrected reads. The third phase uses paired...advantages in running FSG on multiple threads. Moreover, we have studied th...2313 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for...aphMapMapper for long and error-prone readshttps://github.com/isovic/grap.../ marginAlignTools to align nanopore reads to a referencehttps://github....blers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nano...2305 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be bro...ault, "filterbyname" discards reads with names in your name list,...(can be mapped concordant or discordant, doesn't matter) are sha...2255 days ago
- Download this https://github.com/trinityrn...deprecated -m64 -g -O2 -MT pull_reads_with_kmers.o -MD -MP -MF .deps/pull_reads_with_kmers.Tpo -c -o pull_rea...-fopenmp -c ./analysis/ReadsToTranscripts.cc -o obj/analys...has been Installed Properly ReadsToTranscripts: has been I...
2118 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24 └1...e number Subread Region (start_stop using polymerase read coordinates) readScore barcodeScore...1975 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to...pplementary alignment flag. Chimeric reads are indicative of structural... in RNA-seq. In short, chimeric reads can be split in to two or mor...can realignment those representative reads to the correctly position via...1822 days ago
