Results for "discovery"
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Next Generation Sequencing (NGS) Tutorials
...ipeline for read cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping using next-gen...3472 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...alignment, sequence search and clustering, function prediction, motif discovery, functional site recognition...sis, association analysis, population simulation, haplotyping, marker discovery, genotype calling. Syste...3483 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript discovery and differential analysis wit...2916 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps...2916 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...ns. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provides explicit sup...insertions (MEIs) as well as generating outputs tailored to aid in SV discovery.2891 days ago
- ...omes are required to get acceptable results, but the method gains power across genomes and processing more genomes provide better results.To run discovery or genotyping on a single seq...
2783 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and...Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84....
2795 days ago
Method in Comparative genomics !!
...motifs. The methods do not rely on previous knowledge of gene function and in that way differ from the current literature on computational motif discovery. Based on the genome-wide con...2718 days ago
- ...variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary to...
2725 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (...s. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is availa...2676 days ago
