Results for "distance"
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...mat => 'emboss', -file => 't/data/insulin.water'); my $aln = $alignin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...2638 days ago
Perl script for calculate Levenshtein distance
sub levenshtein_dist { my ($str1, $str2) = @_; my ($len1, $len2) = (length $str1, length $str2); if ($len1 == 0) { return $len2; } if ($len2 == 0) { return $len1; } my %mat; for (my $i = 0; $i2329 days ago
Perl script to find the distance beetween all the contigs and scaffolds
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; $| = 1; #Script to see the distance beetween all the contigs and scaffolds #Usage: perl clustalReads.pl genome.fa >...2129 days ago
- ..."chr1" or "1"). "from" and "to" are 1-based coordinates --matepair-distance Filter by distance between matepairs....
2115 days ago
- ..., ); for my $word_pair (@tests) { #Nice way to split the values my ($w1, $w2) = @$word_pair; my $simw = simw $w1, $w2; say "distance between $w1 and $w2 is: ", 1...
1789 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html971 days ago
Tadpole is 250x faster than SPADes assembler !
...ter the error as matching current bases, for tail. deadzone=0 (dz) Do not try to correct bases within this distance of read...965 days ago
Perl script to find edit distance between two sequences !
#!/usr/bin/perl use strict; use warnings; sub edit_distance { my ($s1, $s2) = @_; my $len1 = length($s1); my $len2 = length($s2); my @dp; for (my $i = 0; $i413 days ago
