Results for "distance"

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  • Andi

    This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial g...

    Tags: Bioinformatics, NGS, Sequence, Andi, Evolution, Distance, Tool

    2877 days ago

  • https://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/Phylogenetics/phylo12.html #P-distance #Distance #Calculation #Sequences #Align

    Tags: P, Distance, Calculation, Sequences, Align

    2174 days ago

  • The Jaro distance is a measure of similarity between two strings. https://rosettacode.org/wiki/Jaro_distance#Perl #Jaro #Distance

    Tags: Jaro, Distance

    1763 days ago

  • The Distance Calculation Formula https://www.cut-the-knot.org/pythagoras/DistanceFormula.shtml #Distance #Calculation #Formula

    Tags: Distance, Calculation, Formula

    1647 days ago

  • Levenshtein and Damerau-Levenshtein distance !

    Levenshtein Distance Also known as Edit Distance, it is the number of transformations (deletions, insertions, or substitutions) required to transform a source string into the target one. For example, if the target term is “book” and the source is “back”, you will need to ...

    Tags: Edit, Distance, Levenshtein, Damerau-Levenshtein, distance

    913 days ago

  • Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

    Tags: patristic, distance, species

    2425 days ago

  • Edit distance application in bioinformatics !

    There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–Levenshtein distance allows insertion, deletion, substitution, and the transposition of two adjacent characters; ...

    Tags: Edit, distance, application, bioinformatics

    2304 days ago

  • Mash: fast genome and metagenome distance estimation using MinHash

    Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10....

    Tags: Mash, fast, genome, metagenome, distance, estimation, MinHash

    2298 days ago