Results for "distances"
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...O data sets, Biomart, GO, KEGG, Atlas, ArrayExpress, and PIPAx database. As for the analytics, there is gene selection, quality control, scoring distances between experiments with mult...3489 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Bec...
2905 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...scale to arbitrarily large genomes and arbitrarily large phylogenetic distances. Results: We present Cnidari...ranscriptomic data with no limitation on ge-nome size or phylogenetic distances. We successfully simultaneous...2870 days ago
- ...Scaffolding In reference-based mode, pyScaf uses synteny to the genome of closely related species in order to order contigs and estimate distances between adjacent contigs. Co...
2684 days ago
- ...sms and their interactions. Here we developed an automated metagenome binning software, called MetaBAT, which integrates empirical probabilistic distances of genome abundance and tetra...
2608 days ago
- PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.
2453 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...ing gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizing evolutionary models, (iii) calculating distances between trees of different si...2257 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: G...1755 days ago
- ...tic mean (UPGMA) method. Note that UPGMA is actually a generic method and thus the walkthrough could apply to any objects A-G for which pairwise distances can be calculated. A small CG...
925 days ago
