Results for "elements"

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  • Regulatory elements http://www.nature.com/nrg/series/regulatoryelements/index.html #Regulatory #Elements

    Tags: Regulatory, Elements

    3406 days ago

  • dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, de-novo, assembly, annotation, Pipeline, Transposable, Elements

    2308 days ago

  • MGERT: Mobile Genetic Elements Retrieving Tool

    MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.

    Tags: MGERT, Mobile, Genetic, Elements, Retrieving, Tool

    1777 days ago

  • dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, pipeline, find, annotate, quantify, Transposable, Elements, TEs

    1690 days ago

  • ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.

    How cells, tissues and organisms interpret the information encoded in the genome has vital implications for our understanding of development, health and disease. Launched in 2003, the ENCyclopedia Of DNA Elements (ENCODE) project has the aim of mapping the functional elements in the human genome ...

    Tags: ENCODE3, collection, research, articles, Encyclopedia, DNA, Elements, datasets, tools

    1329 days ago

  • HTTDB - Horizontally transferred transposable elements database

    Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is mediated by its own proteins and does not contribute to the survival of the host that it inhabits, they are known as...

    Tags: HTTDB, Horizontally, transferred, transposable, elements, database

    2257 days ago

  • Flanker

    Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be flexibly parameterised to finetune outputs by charact...

    Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes

    1125 days ago

  • Josefa González Lab

    Lab focus on understanding how organisms adapt to their environments. They combine omics approaches with detailed molecular and phenotypic analyses to get a comprehensive picture of adaptation. Our aim at being internationally recognized as a leading lab in the field of environmental adaptation. ...

    Tags: adaptation, genome, fly, repeats, transposable, elements

    953 days ago