Hagfish - assess an assembly through creative use of coverage plots
...at is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the conce...y or identification of structural variation in a genome re-sequencing experiment. Hagfish requires a referenc...2869 days ago
Statistical for biological research
...in biological research, but too often it is considered only after an experiment is completed, when it may be...f Significance column on statistics explains many key statistical and experimental design concepts. Other reso...2703 days ago
2681 days ago
GeneProf: analysis of high-throughput sequencing experiment
...om microarrays). Comprehensive Resource:GeneProf provides a comprehensive resource of fully analyzed next-generation sequencing data. Experimental results can be easily acces...2458 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs...2314 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be a...2096 days ago
1907 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, a...1831 days ago
Interactive Bioinformatics Resources !
Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bio960 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
...your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and c...653 days ago