Results for "experiment"

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  • How to calculate the coverage for a NGS experiment https://www.ecseq.com/support/ngs/how-to-calculate-the-coverage-for-a-sequencing-experiment #NGS #Coverage

    1760 days ago

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  • R package for visualising GO enrichment

    ...ent results as word clouds and arranges them together with figures of experimental data. This allows us to dra...clustering, where for each gene list we display its behaviour in the experiment alongside with its GO annotat...

    3892 days ago

  • Surrogate Variable Analysis (SVA)

    ...emoving batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva packag...rrogate variables for unknown sources of variation in high-throughput experiments (Leek and Storey 2007 PLoS G...

    3428 days ago

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  • Biostatistics

    Biostatistics

    ...gy. The science of biostatistics encompasses the design of biological experiments, especially in medicine, pha...shery; the collection, summarization, and analysis of data from those experiments; and the interpretation of,...

    2483 days ago

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  • GeneProf: analysis of high-throughput sequencing experiment

    GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of GeneProf's highlights include: Easy-to-use web-base...

    Tags: GeneProf, high-throughput, sequencing, experiment

    2448 days ago

  • ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment

    ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection, the sensitivity of inferred TF-DNA bindin...

    Tags: ChIPulate, Python3, framework, simulate, read, counts, ChIP-seq, experiment

    1820 days ago

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