Results for "expression"
Users
Interests: Gene Expression Analysis3710 days ago
- About me: ...sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcriptome assembly, and differential expression analysis, and developing pipe...
1124 days ago
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Blogs
Five unique traits of effective computational biologist
...have an open mind to sources of knowledge that others may shut out. In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project o...3935 days ago
List of gene ontology software and tools
...hment job for experimental biologists to identify enriched Gene Ontology (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis...3694 days ago
- +13 more Blogs
Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3934 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3930 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3937 days ago
- ...th inhibitor/not). MiRNA is small RNA molecules known to inhibit mRNA expression of particular gene by binding...te however sometime this region become hyper-methylated thats prevent expression of host gene. Thus , integrat...
3545 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3929 days ago
Pages
- ...atching and motifs Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Mac...y , March 5, 2003. Computational Analysis of Complexity in Gene Expression Arrays Building your own Bio...
3905 days ago
Genome Assembly Tools and Software - PART2 !!
...m to assemble transcripts and estimate their expression levels from RNA-Seq reads. C...1 – Transcriptome Assembly and Isoform Expression Level Estimation from Biased...reference genome, across a broad spectrum of expression values and in presence of alt...2670 days ago
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Top-level pages
- ...e temporal and spatial organisation of their expression in the cell encoded by the DN...s, and functional genomics experiments (e.g. expression data, yeast two–hybrid...sequences but also sequences regulating gene expression. A comparison of the genomes...
3932 days ago
- ...HUMAN LUNG CANCER: http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.106.385&rep=rep1&type=pdf Towards knowledge-based gene expression data mining: http://www....
3931 days ago
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Wire posts
News
R package for visualising GO enrichment
...and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each...3924 days ago
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
...of chromatin biology. The conference will focus on the latest developments in understanding chromatin structure and function, particularly gene expression and genome integrity.This mee...3909 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...g the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3933 days ago
Postdoctoral position in bioinformatics @ Sweden
...group. We are focused on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have s...3932 days ago
- +30 more Opportunity posts
ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3932 days ago
- ...res the marriage of researchers from mathematical and biological backgrounds. Research Area: Linear models for microarray data Digital gene expression technologies Detection of mo...
3932 days ago
- +13 more ResearchLabs posts
Video
How Genes are Regulated: Transcription Factors
...w these dynamic proteins physically interact with DNA allows us to better understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3879 days ago
DNA is packaged in a chromosome experiment
...structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to c...3861 days ago
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Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2901 days ago
Perl script to find coding regions in DNA sequences
...e ($line = ) { # extract the two values or columns with a regular expression # A group of letters and a...ence. To split the sequence in segments of length # three, a regular expression will be used searching for al...2139 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
...ng language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3515 days ago
Groups
...l topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary tr...3886 days ago
Tags
Comments
Comment on "Tools for Differential expression analysis"
...e for performing differential expression analysis, including: DES...and testing for differential expression. edgeR: Another R packag...inear model to model the gene expression data and provides methods for...ls available for differential expression analysis. The choice of tool...405 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ed species. Validate the results: Validate the results of the synteny analysis by comparing them to other sources of genomic data, such as gene expression or functional analysis. Over...408 days ago
- +9 more Comments
