Results for "fast"
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Comment on "Basic command-line to run BLAST"
...ents," and calculates a score for each alignment that reflects its degree of similarity. BLAST is widely used in biological research because it is fast, efficient, and easy to use....409 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1233 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny is the latest input in computational synteny halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https...1419 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
SynChro seems to be the fastest synteny detection tool. http://www.lcqb.upmc...018e5c2aa.pdf The paper conclude: SynChro is a fast, efficient and user-friendly...antages of SynChro are the following: (i) it is fast (it takes, on a desk computer...1583 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ed query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping=0). [f...clipping for supplementary alignment. [false] -C --comment Append FASTQ comment to SAM output. [fals...2111 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have...3007 days ago
Comment on "List of popular bioinformatics software/tools"
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, suc...3025 days ago
Comment on "Software packages for next gen sequence analysis"
DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. This could be a nice tutorial for genome assemblies with overlapping sequences http://www.lynnon.com/pc/assembly.html3228 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A Fast Recursive Algorithm for Optimum Sequential Signal Detection in a BLAST System http://externe.emt.inrs.ca/users/benesty/papers/sp_jul2003.pdf3813 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Fast Dynamic Algorithm for Sequence Alignment based on Bioinformatics http://research.ijcaonline.org/volume37/number7/pxc3876636.pdf3818 days ago
