Results for "fasta"
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Download mutliple fasta file from NCBI in one GO!!
...then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click giv...\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs.txt >sequence.fasta where GIs.txt contains ...3894 days ago
Barrnap: Bacterial ribosomal RNA predictor
...genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and wr...2534 days ago
- ...g strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignme...
2993 days ago
RNA-Seq De novo Assembly Using Trinity
...: Trinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU 6 --max_memory 20G Find assembled transcripts as: 'trinity_out_dir/Trinity.fasta'2949 days ago
REAPR: a universal tool for genome assembly evaluation
...rts mis-assemblies and other warnings, and produces a new broken assembly based on the error calls. The software requires as input an assembly in FASTA format and paired reads mappe...2935 days ago
YASS :: genomic similarity search tool
...is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it prod...most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ...2909 days ago
Bioinformatics tools and software
.... PREFAB >Protein Reference Alignment Database. MSA benchmark collection >Selected multiple alignment benchmarks in a standardized FASTA format.2845 days ago
- ...they run out, single copy contigs, and ii) the small_contig_inserter, which inserts the small contigs within scaffolds buildfasta converts the scaffold(s) map(s) into Fasta sequences....
2837 days ago
- ...synteny, in the context of the entire sequences and their annotation. It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or raw format.
2782 days ago
- ...nes using BLASTx or BWA. The reads are distributed to separate directories, where they are assembled separately using SPAdes. The main output is a FASTA file of the (in frame) CDS po...
2724 days ago
