Results for "fasta"
Top-level pages
Useful Links for Bioinformaticians
...o analysing sequence databases Sequence Comparison (Keith Robison) Database Research at Penn Biology, E. W. Myers Bill Pearson talks about Fasta Bioinformatics: Elementary S...3120 days ago
Perl one-liner for bioinformatician !!!
...otations/ http://genomics-array.blogspot.com/2010/11/some-unixperl-oneliners-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-file/3618 days ago
Commercial and public next-gen-seq (NGS) software
...en NW dynamic algorithm to a SW(like) local alignment. Authors are from CRIBI in Italy. Win/Linux. RMAP - Assembles 20 - 64 bp Illumina reads to a FASTA reference genome. By Andrew D...3508 days ago
Apps for Busy Bioinformatics Researchers !!!
...ludes handy tools such as "Reverse Complement", "Jump to", fast and end scrolling, "Chromatogram adjustments", amino acid translations, "export to fasta", and "searching for segment"...3531 days ago
Software packages for next gen sequence analysis
...NW dynamic algorithm to a SW(like) local alignment. Authors are from CRIBI in Italy. Win/Linux. * RMAP - Assembles 20 - 64 bp Illumina reads to a FASTA reference genome. By Andrew D...3232 days ago
- ...s. It supports, and can inter-convert: fastq fasta fasta+qual sam scarf (an old Illumi...r an exact number of reads or bases) Changing fasta line-wrapping length Reverse-...irs) Pipe in a gzipped sam file and pipe out fasta: reformat.sh in=stdin.sam.gz...
2703 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...I to parse Reference genome: FASTA Output: VCF SOAPindel...ds) Input: raw NGS datasets; fasta, fastq, gzipped or not; no r...Input: BAM Reference Genome: FASTA indexed with SAMtools faidx...ith homology modeling Input: FASTA protein sequence, or accessio...2898 days ago
- ...eference genome, followed by an additional 63 base pairs of alignment. FASTA Format: text format for storing raw sequence data. For example, the FASTA file at: http://www.ncbi.nlm....
2858 days ago
Genome Assembly Tools and Software - PART1 !!
...ommand-line Perl script and additional files van be downloaded below. The input data is given by pre-assembled scaffold sequences (FASTA) and NGS paired-read data (FASTA or FASTQ). SSAKE 3.8.4 &...2675 days ago
Run miniasm assembler on nanopore reads !
...nd the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A.fasta -t10 -X > AONT...0final.eps Assemble with miniasm: miniasm -f ONT_A.fasta AONT.paf > AONT.gfa ...2320 days ago
