BOL

Results for "fastaq"

Tags

• • Neelam Jha@neelam

  

  zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

  Tags: fastaQ2fasta, fastaq, fasta, Oneliner

  3636 days ago

• • Surabhi Chaudhary@surabhi

  

  #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

  Tags: BAM, fastaq, conversion, Samtool

  2955 days ago

• • Jitendra Narayan@admin

  

  Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

  Tags: FASTA, FASTAQ, NGS

  3618 days ago

• • Jit@jit.aber

  

  FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

  Tags: Oneliner, NGS, FastaQ, Fasta

  3625 days ago

• • Rahul Nayak@rahul

  

  Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

  Tags: Fastaq, Count, Number, Grep, Dirty, Oneliner, NGS

  3151 days ago