Results for "faster"
Blogs
String graph based genome assembly software and tools !
...: Fast String Graph The new integrated assembler has been assessed on a standard benchmark, showing that fast string graph (FSG) is significantly faster than SGA while maintaining a...2310 days ago
Basic command-line to run BLAST
...tell blast about our database. BLAST needs to do some pre-work on the database file prior to searching. This helps to make the software work a lot faster. Because you installed your o...2225 days ago
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Bookmarks
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3644 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...latively slow and computationally expensive, forcing researchers to use faster abundance estimation programs...se pair reads at a rate of over 4.1 million reads per minute, 909 times faster than Megablast and 11 times f...2850 days ago
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Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3932 days ago
Top-level pages
Most Commonly used Awk by Bioinformatician
...uff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in loading these apps into memory, and it's much faster to do it all with one. This i...3894 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ives and better sensitivity compared to results obtained from other aligners Aligns exome data and performs variant calling an average of 3 times faster than alternative pipelines A...2890 days ago
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Wire posts
News
4273π: Bioinformatics education on low cost ARM hardware
...course 4273π Bioinformatics for Biologists is embedded.Though far slower than current desktop and laptop computers, the Raspberry Pi is notably faster than the Cray 1 supercomputer...3879 days ago
- ...ned with a new clustering chemistry deliver a significant increase in data density (6 billion clusters per run). Using state-of-the art optics and faster chemistry, HiSeq X Ten can pr...
3743 days ago
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Opportunity posts
In need of Computing Resources???
...ject.eu/gromacs ), especially for GROMACS application. Write back if you have any infrastructure requirement for your GROMCAS code to run more faster.3472 days ago
Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...strip advances in computing power to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster computers; it will require sm...3883 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...n are being fundamentally altered by the capacity to routinely perform comprehensive molecular characterization. Nowhere is this change happening faster than in the field of cancer....3852 days ago
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Bio-Scripts
Genetic Algorithms demonstration with word DNA in Perl
...rent2->{dna}; # note we do operations on BYTES, not BITS. This is because bytes # are the unit of information (and preserving them is the faster # breeding method) fore...2353 days ago
Tadpole is 250x faster than SPADes assembler !
...ll be generated in same pass as kmer counts. Much faster but counts will be lower, by...-allocate memory rather than dynamically growing; faster and more memory-efficient. A...957 days ago
Tags
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server, and to date, over 7,000 jobs have been processed since its first launch in 2016. Here, we present a newly ...Tags: DFAST, flexible, prokaryotic, genome, annotation, pipeline, faster, genome, publication
2345 days ago
Comments
Comment on "URMAP, an ultra-fast read mapper"
...ust be in FASTQ format or gzip-compressed FASTQ format. It is generally faster to use uncompressed reads bec...The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somewhat less accurate. T...1265 days ago
Comment on "Setting up autoConTAMPR !"
...I/IS/ISHIGAKI/Text-CSV-2.00.tar.gzWelcome to Text::CSV (v.2.00)=============================If you install Text::CSV_XS v.1.02, it makes Text::CSV faster.Checking if your kit is compl...1423 days ago
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