Tags: Bioinformatics, FASTQ, Compression, Decompression, NGS
2926 days ago
Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly
2915 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes ...Tags: Bioinformatics, FASTQ, Reads, NGS, Mapping, Alignment, Reference
2915 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in fo...Tags: Bioinformatics, FASTQ, NGS, Assembly, Genome, CANU, Assembler, Tool, Software
2898 days ago
Tags: Bioinformatics, FASTQ, Reads, Map, Mapping, Segemehl, NGS
2901 days ago
Tags: FQC, Dashboard, Integrates, FastQC, results, web-based, interactive, extensible, FASTQ, quality, tool
1256 days ago
How to intrepet the FASTQ files?
How to intrepet the FASTQ files? What does Q score mean? Does + have any meanings?Tags: Bioinformatics, NGS, FASTQ, Qscore
2789 days ago
Tags: Bioinformatics, Analysis, NGS, fqtools, FASTQ
2688 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as ...Tags: Quip, Aggressive, compression, FASTQ, SAM, BAM, files
696 days ago