Results for "fastx"
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Useful Publications and Websites for Deep Sequencing Data Analysis
...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for high-throughput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads...3769 days ago
Perl one-liner for bioinformatician !!!
...ound massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools,...3617 days ago
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Bio-Scripts
- ...4==1) {printf(">%s\n",substr($0,2));} else if(NR%4==2) print;}' > file.fa #seqtk seqtk seq -a input.fastq > output.fasta #Bioawk bioawk -c fastx '{print ">"$name"\n"$seq}' in...
839 days ago
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- There are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence need...
Tags: fasta, fastq, convert, sed, awk, seqtk, bioawk, fastx, Emboss, fastq2fasta
2294 days ago
