Results for "files"
Top-level pages
...thin the context of the sequence, and its six-frame translation. Chromas It will display and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files which the analysis programs f...3932 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...3933 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory...1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.ncbi.nlm.nih.go...3909 days ago
Most Commonly used Awk by Bioinformatician
...2 and 3 and put it at the end of a row or replace the first column: awk '{print $0,$2+$3}' input.txt awk '{$1=$2+$3;print}' input.txt join two files on column 1: awk 'BEGIN{whil...3902 days ago
List of bioinformatics open source projects/software.
...http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for scientists and c...to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Genome Browser h...3746 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulat...imcoal2/SimCopy An R package simulating the evolution of copy number profiles along a tree. http://bit.ly/s...3727 days ago
List of In-silico Binding Site Prediction Tools
...d a database called sc-PDB. The sc-PDB database provides separated MOL2 files for the ligand, its binding s...calculate pore dimensions and analyze atom accessibility. MolAxis reads files in the standard Protein Data...3733 days ago
Perl one-liner for bioinformatician !!!
...tuting text, deleting and printing certain lines, parsing logs, editing files in-place, doing statistics, carrying out system administration tasks, updating a bunch of files at once, and many more. Perl...3618 days ago
Next generation sequencing in R or bioconductor environment
...per region/gene of interest (rows) for each test sample (columns). Such a count table can be imported into R or generated from BAM alignment files using the countOverlaps funct...3614 days ago
Commercial and public next-gen-seq (NGS) software
...: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files, clean and filter contigs, lo...ion for the Illumina Sequence Analyzer output that uses the probability files instead of the sequence files...3508 days ago
