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Comment on "Short-read assembly using Spades !"
...reads. If the reads are paired-end, they should be provided in separate files for each read. Run SPAde...gt; Replace read1.fastq and read2.fastq with the names of the input files containing the paired-end rea...404 days ago
Comment on "Spades tutorial PDF"
Spades tutorial http://cab.spbu.ru/files/release3.11.1/manual.html#yaml792 days ago
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/901 days ago
Comment on "Far Manager Commands and Links !"
...button Shift, which is mainly intended for working with files and archives, namely: F1- add files to archive F2- extract files...ed menu item F11- use sorting about groups F12- show marked files first...923 days ago
Comment on "Far Manager Commands and Links !"
Alt, which is mainly intended for working with files and directories, namely: F1- open the current disk...oth in an external program and in the file manager itself F5- printing files F6- here you can create a li...923 days ago
Comment on "Far Manager Commands and Links !"
...hiftF1 Create new archive from selected files ShiftF2 Extract files from selected archive ...o;. Compare behavior for *.exe files F2 Configurable...ass by recycle AltDel Wipe files/folder AltF8 Sh...944 days ago
- ...multiple reference genomes: $ ./fastANI --ql [QUERY_LIST] --rl [REFERENCE_LIST] -o [OUTPUT_FILE] Again, QUERY_LIST and REFERENCE_LIST are files containing paths to genomes,...
1085 days ago
Comment on "Sibelia: A comparative genomics tool"
...u can specify multiple FASTA files, just separate them with spac...this parameter. Although the files exist only for a very short...g the "Circos" software [3]. Files for generating such diagram a...bioinf.spbau.ru/sites/default/files/SyntenyFinder.pdf 2. Max A....1268 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...genomes.maf. The --directory setting is also used for storing temporary files during the run.The prefix of each input filename will be used as the genome name in the output files (eg. genome1 from genome1.fsa...1269 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...o is to combine the reads into a single file, for gzipped files, this can be done with zcat, or for unzipped files cat. Ex. $ cat rea...ving the combined fasta file, and re-zipping any unzipped files. Then download the output fil...1320 days ago
