Results for "filtering"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...uite of utilities for comparing genomic features. Quinlan and Hall, Bioinformatics 26:841-842, 2010. Publisher Website Data quality assessment, filtering, and correction SolexaQA: At...3763 days ago
List of bioinformatics open source projects/software.
...tics software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF file...3740 days ago
Next generation sequencing in R or bioconductor environment
...DNA sequences. Documentation rGADEM: Documentation MotIV: Documentation ShortRead The ShortRead package provides input, quality control, filtering, parsing, and manipulation fu...3608 days ago
Apps for Busy Bioinformatics Researchers !!!
...ng data including small variations, copy number variations (CNVs), and loss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated...3524 days ago
- ...the input is paired. Quality trimming (either or both ends) Quality filtering Fixed-length trimming Generat...eads or only read 2) Adding /1 and /2 suffix to read names GC-content filtering Length-filtering Testing for...
2697 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...el compatible outputs GeneTalk Description: Combines tool for filtering and data analysis with an onl...exonic variation in the Phase 3 1000 Genomes data under user defined filtering criteria”; web app prog...2892 days ago
- ...companion tools, currently bundled with SAMtools, for identifying and filtering genomics variants. bowtie: w...so includes bcftools, a set of command line tools for identifying and filtering genomics variants. Created by...
2852 days ago
List of visualization tools for network biology
...gration and visualization http://Pathview.r-forge.r-project.org/ PINA Integrated platform for protein interaction network construction, filtering, analysis, visualization and...2271 days ago
Some useful Bioinformatics links
...tp://mummer.sourceforge.net/manual/#nucmer assembly_olc.pdf http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf SAM and BAM filtering oneliners https://gist.githu...2225 days ago
Tools for Protein-Protein Docking !
...,VDW and desolvation energy termsMD simulated annealing refinement . Filtering based on external data. ...rigid search: FFTShape complementarity Clustering of good solutions, filtering using a priori info...2185 days ago
