Results for "fine mapping"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ains open, how to correctly define the synteny (presence of two...symapdb.org/) SyMAP (Synteny Mapping and Analysis Program) v4.0...nChro is a tool designed to define conserved synteny blocks. It rec...nic relationships or physical mapping can be obtained. http://www.a...2593 days ago
Bioinformatics PhDs - Cover Letter
OverviewThe reception your cover letter will receive is more varied and unpredictable than the other elements of...t are intimidated by you and your institutional pedigree. There are many fine sc...3349 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop...OI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3470 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14...ics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://re...3879 days ago
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Files
Bioinformatics approach to Boar Taint
...sample population for validation and then used for constructing SNPs haplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs through association mapping of genotyped SNPs. &nb...3772 days ago
- Randomness and Probability Randomness and probability are two differnet concepts:...s the object to be measured by probability. For example, probability is a mapping from randomness to the real n...
1597 days ago
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Pages
Bio++ : C Language libraries for your biological need
...p; Gaut 1994, Yang & Nielsen 1998, Goldman & Yang 1994 + user-defined.Support for rate-across site...ral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequences simulation under an...3930 days ago
Genome Assembly Tools and Software - PART2 !!
...RMAP 2.1 – Short-read MappingRMAP is aimed to map accu...ds or bisulfite-treated reads mapping. There is no limitaions on re...ontains programs that support mapping of reads to a reference genom...IMAGE 2.4.1 – Iterative Mapping and Assembly for Gap Eliminat...2669 days ago
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Top-level pages
- ...Classification - Arranges the data into predefined groups. For example, an emai...ike classification but the groups are not predefined, so the algorithm will try t...http://www.cs.helsinki.fi/u/htoivone/pubs/gene_mapping_by_pattern_discovery.pdf Dat...
3929 days ago
- ...e DNA sequence of organisms and fine-scale genetic mapping efforts. The field also in...echniques of sequencing, genome mapping, data storage, and bioinforma...cept is materiomics, which is defined as the study of the material pr...meeting held in Maryland on the mapping of the human genome in 1986.T...
3925 days ago
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Wire posts
News
- Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea,...11182690 http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articlesho...
3865 days ago
Scientists map 17,294 proteins produced in human body
Indian scientists missed the genomic profiling bus, but...ed analysis of human tissues, body fluids and cells mapping the large majority of the hum...d the turn of the millennium, this is an equivalent mapping of the human proteome.The res...3612 days ago
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Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is ava...some profiling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on...3899 days ago
Research Fellow @ Mendel laboratory
IRCCS Casa Sollievo della Sofferenza – Mendel laboratory is seeking one talented bi...eq and miRNA-Seq data. Main activities will be: (i) data analysis (short-reads mapping, variants call and annotation...3796 days ago
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ResearchLabs posts
- Melanie Bahlo is an applied statistician working in the areas of statis...tics and population genetics. Her main area of research is linkage mapping, in humans and mice. Research Area: Mapping loci in ENU mutants in mice i...
3931 days ago
- Roslin Bioinformatics Group The Law group provides internal Institute-specific d...national animal science community, particularly tools and resources for genome mapping. Head: Andy Law. Members:...
3796 days ago
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Video
- Air date: Wednesday, January 04, 2012, 3:00:00 PM Time...Botstein and three colleagues proposed a method for mapping human genes that laid the gro...he Human Genome Project. The basic principle of the mapping scheme was to develop, by rec...
3856 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
Full Lecture Abstract Creating an Evidence Engine to Support Personalized Medicine...iest studies developing and applying linkage disequilibrium methods as genetic mapping tools. The laboratory also d...3853 days ago
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Bio-Scripts
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_he...2291 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
BAM files and mapping BESST requires sorted and indexed BAM files as input. Any read aligner +...indexed BAM files with BWA-mem or BWA-sampe in one go. An example call for mapping with this script is python...2107 days ago
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Tags
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole in the fat primarily cause boar taint. Metabolism of androstenone and sex steroids share a common pathway which makes ...Tags: Sequencing, DNA, Whole genome re-sequencing, Boar taint, androstenone, skatole, pig, QTL, SNP, haplotype, fine mapping, SSC
3772 days ago
Comments
Comment on "Bioinformatics approach to Boar Taint"
Fine mapping of a QTL affecting levels of skatole on pig chromosome 7 https://bmcgenet.biomedcentral.com/articles/10.1186/s12863-017-0549-82377 days ago
