BBTools for bioinformatician !
...pping small RNA's with BBMap use the following flags to report only perfect matche...use the "copyundefined", "hdist", and "qhdist" flags together for a lot of flexibi...et the same sensitivity as BBMap by adding the flags "minid=0.76 maxindel=16k minh...2233 days ago
Basic command-line to run BLAST
..._human_blast_results.tab \ -evalue 1e-5 \ -outfmt 6 \ -max_target_seqs 1 Summary Review: command line programs such as blast use flags to get information about how...2206 days ago
2829 days ago
Standardized velvet assembly report
...H. If using BLAST, add blastall and formatdb. Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize...2666 days ago
Check Linux server configuration !!
...ion : yescpuid level : 10wp : yesflags ...3615 days ago
2831 days ago
Perl Special Vars Quick Reference
...hes. $^R Last regexp (?{code}) result. ${^RE_DEBUG_FLAGS} Current value of regexp debugging flags. See use re 'debug';...ith -c switch. $^D Current value of debugging flags $^F Maximum system file...2606 days ago
Install Parrot Virtual Machine !
...n..................................no. inter::shlibs - Determine flags for building shared libraries...|slow|bounds -R --runcore trace|profiling|subprof -t --trace [flags] -D --parrot-debug[...1499 days ago
Steps to install Conda on Linux !
...anaconda.com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #Follow the yes/no flags and finish till the end #Che...1145 days ago
Tags: Bioinformatics, SAM, Flags, NGS
2829 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...kat comp --help to get help for the program, then create a comparison between the combined reads and the assembly. Make sure that you use the flags for canonical hashes&nbs...1299 days ago
1482 days ago