3854 days ago
1913 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
related tasks on Linux-based computer clusters of any type and siz...y, there exist two versions of VirtualFlow, which are tailored to different types of tasks: VFLP: VirtualFlow for Ligand Preparation VFVS&...ure. https://github.com/VirtualFlow htt...1384 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE...Provides a parallel loop utilizing MCE for building creative loops. MCE::Flow A parallel flow mode...2613 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by...dges and trimming short branches. Unitigs were generated based on minimum cost flow anal...2453 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algo...1389 days ago
1535 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a s...ts of codon positions), as well as linkage disequilibrium, recombination, gene flow and...1219 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.948 days ago