Bioinformatics market in India
Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by application b...3898 days ago
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it imp...2941 days ago
REAPR: a universal tool for genome assembly evaluation
...requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to l...2941 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly e...o analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop compute...2919 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes ali...esigned to run on multi-core architectures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around t...2904 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NG...end re-sequencing data set. Hagfish has more power the larger the insert size of the paired end library is....2897 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequenc...tions: set the read length/configuration and genome size, then select what you want to...verage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads...2156 days ago