Results for "fragment size"

Wire posts

  • Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

    2106 days ago

  • du -sh * will give you the size of all the directories,files etc in current directory in human readable format. #Linux #Size #Tricks #Folders #Files

    2775 days ago

  • Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete #Delete #Size #Linux #Tricks

    2761 days ago

  • Delete size zero files from a folder: find . -size 0 -delete #Linux #Trick

    2626 days ago

  • Convert ps2pdf full size without cropping it : $ ps2pdf -dEPSCrop file.ps #Linux #Crop #PS #ps2pdf

    2611 days ago

  • Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size

    2458 days ago

  • To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

    2463 days ago

  • #Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

    2453 days ago

  • Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

    2430 days ago

  • Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas #fasta #remove

    2307 days ago