2601 days ago
2526 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262507 days ago
GeneProf: analysis of high-throughput sequencing experiment
...end GeneProf. Existing software can be easily wrapped in the workflow framework (cp. Section 'Module Dev...rom funding by the Medical Research Council and the EU Framework 7 Project "EuroSyStem".2480 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...formation such as pseudogenes, translation exceptions, and orthologous gene assignment between given reference genomes. In addition, the modular framework of DFAST allows users to cust...2348 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...g is an emerging and rapidly developing technology. It is not clear what will be most informative. We hope that IONiseR will provide a framework for visualisation of metrics...2339 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available in the perl ecosystem (along with Dance...;(Official site) Dancer2 Gantry - Web application framework for mod_perl, cgi, etc. Kossy - A Web framework with simple interface. Mojol...2306 days ago
2306 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...(both on assembly level and on the level of individual assembly points) constructs a merged combined scaffold assembly provides an interactive framework for a visual comparative anal...2305 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization...2294 days ago