Results for "framework"

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  • Dancer is a simple but powerful web application framework for Perl. http://www.perldancer.org/ #Perl #Framework #Website #Development

    Tags: Perl, Framework, Website, Development

    3457 days ago

  • ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies

    Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and inse...

    Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly

    2894 days ago

  • https://medium.com/hashdog-blog/top-10-ruby-frameworks-3cc1214caae7 #Ruby #Web #Framework

    Tags: Ruby, Web, Framework

    2267 days ago

  • SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions

    SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for multiple samples. It can work for >= 2 samples, but we suggest that users should use >= 5 samples as in the work ...

    Tags: SRBreak, Read-Depth, Split-Read, Framework, Breakpoints, Copy-Number, Variable, Regions

    2145 days ago

  • Mesquite: A modular system for evolutionary analysis http://www.mesquiteproject.org/ #Evolution #Framework

    Tags: Evolution, Framework

    1913 days ago

  • Mobyle: a new full web bioinformatics framework

    Mobyle, to provide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical typing system. Mobyle offers invocation of services...

    Tags: Mobyle, full, web, bioinformatics, framework

    2272 days ago

  • Frontend: Perl Web framework documentation - Andrej Sali Lab

    The frontend is a set of Perl classes that displays the web interface, allowing a user to upload their input files, start a job, display a list of all jobs in the system, and get back job results. The main saliwebfrontend class must be subclassed for each web service. This class is then...

    Tags: Frontend, Perl, Web, framework, documentation, Andrej Sali, Lab

    2271 days ago

  • mojolicious: a next generation web framework for the Perl programming language.

    Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much about the language and powerful enough to keep you going, learning by doing was much fun. While most of the techniques used are...

    Tags: mojolicious, next generation, web, framework, Perl, programming, language

    2267 days ago

  • repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric

    Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is correct Their relative order is correct The gap estimate...

    Tags: Repeat, aware, scaffolding, evaluation, framework, Igor, Mandric, repeat-aware

    2199 days ago

  • nQuire: a statistical framework for ploidy estimation using next generation sequencing

    nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where intact nuclei are not preserved. It is implemente...

    Tags: nQuire, statistical, framework, ploidy, estimation, next, generation, sequencing, NGS

    2003 days ago