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• • Jit@jit.aber

  

  Comment on "Phylogenetic for Bioinformatics"

  Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf

  579 days ago

• • Jit@jit.aber

  

  Comment on "URMAP, an ultra-fast read mapper"

  ...or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somewhat less accurate. To get the full speed improvement, the index...

  1273 days ago

• • Jit@jit.aber

  

  Comment on "Important Journals, Blogs and Forums for Bioinformaticians"

  International Journal of Bioinformatics Research and Applications Indexed in  Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)

  1352 days ago

• • Jit@jit.aber

  

  Comment on "ASCIIGenome: genome browser based on command line interface and designed for running from console terminals."

  ...bsp;                      print [-n INT] [-full] [-off] [-round INT] [-hl re]...

  1509 days ago

• • Rahul Nayak@rahul

  

  Comment on "Genome in a Bottle (GIAB) Consortium"

  Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to genera...

  1549 days ago

• • Rahul Nayak@rahul

  

  Comment on "alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life"

  Placentals: http://blogs.discovermagazine.com/loom/2012/02/14/mammals-made-by-viruses/ Tunicates: https://www.pnas.org/content/pnas/101/4/986.full.pdf https://www.pnas.org/content/pnas/102/42/15134.full.pdf  

  1924 days ago

• • Jit@jit.aber

  

  Comment on "List of motif discovery tools !"

  Motif algorithms  This link on Nature explain: how does DNA sequence motif discovery work? Paper on BMC bioinformatics: survey of DNA motif finding algorithms This paper discusses some limitations and potentials of motif discovery algorithms (2005)

  1971 days ago

• • Rahul Nayak@rahul

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...r than 'number' bases long. Default: 1000. minOverlapLength=number - Ignore read-to-read overlaps shorter than 'number' bases long. Default: 500. A full list of options can be printe...

  2088 days ago

• • Rahul Nayak@rahul

  

  Comment on "Run miniasm assembler on nanopore reads !"

  Must read paper https://genome.cshlp.org/content/27/5/737.full

  2156 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...alues are allowed: '4.7m' is the same as '4700k' and '4700000' A full list of options can be printe...ne after the other, but they can be run individually. An example “full pipeline” command would...

  2164 days ago

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