Results for "genes"
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ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize. The identifiers can be uploaded from a text file or interactively from a network of Cytoscape. The type o...Tags: ClueGO, Cytoscape, plug-in, visualizes, non-redundant, biological, terms, large, clusters, genes
1345 days ago
- MCScanX classify genes into five categories, singletons, dispersed, proximal, tandem, and segmental. I am wondering the details definition of these ...
Tags: MCScanX, classify, genes, categories, singletons, dispersed, proximal, tandem, and segmental
1224 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.Tags: GEO2R, compare, groups, Samples, identify, genes, differentially, expressed, across, experimental, conditions
1216 days ago
- Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be flexibly parameterised to finetune outputs by charact...
Tags: Flanker, Python, mobile, genetic, elements, HGT, genome, genes
1147 days ago
DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a key role in the emerging field, synthetic biolo...Tags: DEG, database, essential, genes, prokaryotes, eukaryotes
1116 days ago
DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a key role in the emerging field, synthetic biolo...Tags: DEG, database, essential, genes, prokaryotes, eukaryotes
1116 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from NCBI. Use dataformat to convert metadata fr...Tags: ncbi-datasets-cli, database, download, ncbi, genome, genes, datasets
864 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for ...Tags: GEnView, phylogeny, comparative, genomics, software, analyze, genetic, environment, genes
843 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files containing CDSs. It uses several state of the art ...Tags: Orthoflow, workflow, phylogenetic, inference, genome-scale, datasets, protein-coding, genes
58 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v....Tags: doubletrouble, identify, duplicated, genes, whole-genome, protein, sequences, classify
45 days ago
