Results for "genes"
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Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful” “As we roll out genomic medicine we are fighting against this society-wide misconception that having the bad gene means you’...Tags: Sequencing, health, medicine, genes, disease
3883 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can experience new things that we would not normally be able to experience. It is proved that books can change our lives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Withou...Tags: bioinformatics, computational biology, machine learning, statisitics, data mining, algorithms, sequence analysis, structure analysis, database, phylogeny, genes, strings, MSA
3899 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation (if you have only a few genomes to annotate). Pr...Tags: Tools, bacterial, whole, genome, annotation, prokaryotic, genes
2313 days ago
Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 78 genomes of now-extinct species that were the common ancestors of extant species fr...Tags: Ancestral, Genomes, resource, reconstructed, genes, genomes, across, tree, life
1992 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et al. (2002) Science 296:79) and was used to produc...Tags: FGENESH, Program, predicting, multiple, genes, genomic, DNA, sequences
1944 days ago
- gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the DATA/GENE_INFO directory (described later)-------------------...
Tags: Details, annotation, genes, gene_info, function, ncbi, detail
1922 days ago
alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.
identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on alogorithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene transfer in bdelloid rotifers." science 320.5880 (2008): 1210...Tags: alien_index, identify, potential, contaminants, horizontally, transferred, genes, transcriptomes
1535 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize. The identifiers can be uploaded from a text file or interactively from a network of Cytoscape. The type o...
Tags: ClueGO, Cytoscape, plug-in, visualizes, non-redundant, biological, terms, large, clusters, genes
1342 days ago
