Results for "genome assembly"

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  • BioProgramming

    The completion of the first human genome drafts was just a start of the modern DNA sequenci...eration sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...logically suitable language to handle ever growing genome o...

    3910 days ago

  • Bioinformatics Definitions

    ...s on three types of datasets: genome sequences, macromolecular str...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster...lds can be analysed for whole genomes. Protein–protein inter...;genome random sequencing and assembly of haemophilus–influenz...

    3910 days ago

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  • VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences !http://genome.lbl.gov/vista/index.shtml #Genomics #Seq

    3481 days ago

  • Generate N base genome: perl -e '@b=qw/A T G C/;print ">Genome\n";while($l<N){print @b[int(rand(4))];$l++;}' #Tipsoftheday #Perl

    3865 days ago

  • +203 more Wire posts

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  • Papenfuss Lab

    The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which cau...equence data in cancer Methods for analysis of structural variation in cancer genomes...

    3911 days ago

  • Smyth Lab

    Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolution...

    3911 days ago

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  • Genome Hackers

    Genome Hackers

    INTIMATE secrets hidden in your DNA could be stolen without you even realising...ing a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that...t or bioinformatician you hack the entire genome t...

    3915 days ago

  • BOL Virtual Research Group

    BOL Virtual Research Group

    ...c graphical models Gibbs sampling for motif finding Biclustering algorithms Genome Assembly Developement of new algorithms to speed up the assembly procedure Comparative genomics approaches in genome assembly. Evolutionary Gen...

    3906 days ago

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  • Largest Genome Sequenced

    The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than a human’s and also the largest and the most complete conifer genome ever sequenced. Related Paper: http:/...

    Tags: Sequencing, conifer, genome assembly, plant

    3661 days ago

  • Resolving the complexity of the human genome using single-molecule sequencing

    The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood ten years after its completion. The results in this paper https://www.genomeweb.com/sequencing/team-uses-single-mo...

    Tags: variants, human reference genome, structural and sequence variation, genome assembly

    3183 days ago

Comments

  • Comment on "Short-read assembly using Spades !"

    ...Short-read assembly is the process of constructing a genome sequence from a large number...reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Quality co...

    378 days ago

  • Comment on "Short-read assembly using Spades !"

    ...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads gene...to use SPAdes for short-read assembly: Install SPAdes: SPAdes...everal options for tuning the assembly parameters, such as adjusting...

    383 days ago

  • +26 more Comments