Five points for bioinformatics software/tools
...s not absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3670 days ago
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List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3908 days ago
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Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour w...rated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file...3752 days ago
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Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages....3914 days ago
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Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a...l features that would otherwise require the use of Assembly Language. As Dennis Ritchie...plementation language efficient enough to displace assembly language, yet sufficiently ab...3910 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, datab...for the Ruby language. This project is supported by University of Tokyo (Human Genome C...3910 days ago
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UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome S...3882 days ago
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functional Genomics Summer S...ck big molecular data, and be able to manipulate high density genotypes, whole genome s...3892 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom R...In the ten years since the first human reference genome was completed for US$3 billio...great reduction in sequencing cost. Today a human genome c...3885 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this....BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...rmatician No.1 Mera Naam Tool Developer Hum Apke Genome M...3881 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome o...3808 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...3880 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics,...Description: There is an urgent need to translate genome-era discoveries into clinical...tes, and evaluating patients presenting with whole genomes...3873 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1099 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query...1064 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a prog...ble with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and...3493 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome p...3379 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute...ng for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome,...2325 days ago
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Tags: Sequencing, conifer, genome assembly, plant
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Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood ten years after its completion. The results in this paper https://www.genomeweb.com/sequencing/team-uses-single-mo...Tags: variants, human reference genome, structural and sequence variation, genome assembly
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Comment on "Short-read assembly using Spades !"
...Short-read assembly is the process of constructing a genome sequence from a large number...reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Quality co...378 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads gene...to use SPAdes for short-read assembly: Install SPAdes: SPAdes...everal options for tuning the assembly parameters, such as adjusting...383 days ago