Results for "genome overlapping features"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of d...ch the type of analysis that you are doing. This is particularly true in the case of genome a...3691 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In...e project designed to provide a visual means for simultaneously comparing genomes...
3923 days ago
- +42 more Blogs
Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3929 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, e...owing fundamental topics in bioinformatics: assembling genomes, co...expression, constructing evolutionary trees, analyzing genome r...
3928 days ago
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Files
- Some fish kidnaped a bioinformatician for their genome analysis.
3837 days ago
- Alien spy are looking for human genome sequences ..
3823 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages....3935 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3928 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempt...direct access to many machine-level features that would otherwise require...s in C - extending it by supporting features meant to encourage and suppor...e C++ language. Some of the unique features of the libraries are as follo...3931 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balance...ogramming language that combines syntax inspired by Perl with Smalltalk-like features. Ruby originated in Japan dur...
3931 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequencing e...generation sequencing” (HT-NGS). The decreasing genome sequ...biologically suitable language to handle ever growing genome o...
3931 days ago
- "Bioinformatics is a science of biological predictions and analysi...e's feature: The State of the Genome 2001. "It is defined here as...nsive electronic databases on genomes and protein sequences, and t...s on three types of datasets: genome sequences, macromolecular str...
3931 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beat...chnology.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-s...
3795 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome S...3902 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functiona...ivestock big molecular data, and be able to manipulate high density genotypes, whole genome s...3912 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom Resea...e. In the ten years since the first human reference genome was...g to great reduction in sequencing cost. Today a human genome c...3906 days ago
- +91 more Opportunity posts
ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium fa...tion sequence data in cancer Methods for analysis of structural variation in cancer genomes...
3931 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolution...
3931 days ago
- +47 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak....informatician No.1 Mera Naam Tool Developer Hum Apke Genome M...3902 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome o...3828 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all...ze life. One is example is the genome. In all organisms, DNA contai...mation, and this is called the genome. But the amount of informatio...served between species. If the genome is c...has decoded the natto bacillus genome,...3900 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, The...Description: There is an urgent need to translate genome-era...iabetes, and evaluating patients presenting with whole genomes...3894 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1119 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query...1085 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome p...3400 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biot...working for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome,...2345 days ago
Groups
INTIMATE secrets hidden in your DNA could be stolen without you even realising. By...taking a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, rev...ogist or bioinformatician you hack the entire genome t...3936 days ago
BioJava is an open-source project dedicated to providing a Java framework for processing...tion development for bioinformatics. This group is dedicated to discuss the features, uses, and application of Bio...3886 days ago
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Tags
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ http://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wikipedia.org/wiki/Interval_tr...Tags: genome overlapping features, BED files, IntervalTrees
3532 days ago
Comments
- ...; Move to the next feature not overlapping the current coordinates....ar to grep command, filter for features including or excluding ...sp; Set colour for features captured by regex. &n...sp; setGenome fasta|bam|genome &n...
1504 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...put SAM alignments will be in genome space (not transcriptome). -K...s is a placeholder for future features, such as cDNA mapping) [normal] --overlapper - Perform overlapping instead of mapping. Skips sel...erence sequence is a circular genome. [false] -F, --ambiguity FLT Al...2275 days ago
