Results for "go"

Tags

  • R package for visualising GO enrichment

    An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour in the...

    Tags: R, GO, Gene Enrichments, Clustering, GO annotation, CRAN

    1460 days ago

  • List of gene ontology software and tools

    The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is designed to rigorously encapsulate the known relationships between biological terms and and all genes that are instances of these ...

    Tags: GO, Gene, Ontology, Gene Ontology, Enrichments, Pathway, Annotation

    1230 days ago

  • Pathway Analysis tools ! http://cdwscience.blogspot.de/2013/03/bioinformatics-101-pathway-analysis.html #Pathways #KeGG #Reactome #GO

    Tags: Pathways, KeGG, Reactome, GO

    1033 days ago

  • Cytoscape

    Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

    Tags: Bioinformatics, Cytoscape, Software, Platform, Visualization, Networks, GO

    424 days ago

  • ClueGO

    ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.

    Tags: Bioinformatics, ClueGO, GO, Cytoscope, Pie

    414 days ago

  • BioDBnet

    Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the input type of your data, changing the input type automatically changes the output options to the ones specific for the input selec...

    Tags: Bioinformatics, Database, Conversions, BioDBnet, GO

    414 days ago

  • clusterProfiler

    statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com>...

    Tags: Bioinformatics, clusterProfiler, GO, R, Package, Omics, Genes, Cluster

    400 days ago

  • Tool: Gene Set Clustering based on Functional annotation (GeneSCF)

      -----------   Gene Set Clustering based on Functional annotation   GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entre...

    Tags: Functional annotation, real-time enrichment analysis, KEGG, GO, GeneOntology, REACTOME, cancer db

    392 days ago

  • Enrichr: a comprehensive gene set enrichment analysis

    Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse gene set libraries available for analysis and down...

    Tags: Bioinformatics, Analysis, Enrichment, Enrichr, Web, Server, GO, Pathway, Genes, BED, Ontologies, Drug, Cell, Disease

    85 days ago

  • Pathway Analysis

    Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disclose th...

    Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing

    1016 days ago