3908 days ago
3908 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...or de novo short read assembly using de Bruijn graphs. Zerbino & Birney, Genom...:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assemb...bsite UK RAD Sequencing Wiki page, with bibliography and RADTools software downlo...3741 days ago
List of bioinformatics open source projects/software.
...ramework for molecular modeling and visualization designed for rapid prototyping Bio4j http://bio4j.com/ Bio4j is a bioinformatics platform and graph based database built around m...3719 days ago
Commercial and public next-gen-seq (NGS) software
...high quality assemblies from short reads. Assemblies are presented in a graph form that retains ambiguities...l A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. MIRA2 - MIRA (Mimic...3481 days ago
Software packages for next gen sequence analysis
...high quality assemblies from short reads. Assemblies are presented in a graph form that retains ambiguities...l A. Pevzner from UCSD (published in Genome Research). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mim...3204 days ago
Genome Assembly Tools and Software - PART1 !!
...protein-coding genes using a graph structure combining both de B...adopts multi-step bi-directed graph (MSG). With MSG, the standard...mbly, homology-guided overlap graph construction, and careful gra...sembly via Succinct de Bruijn graph MEGAHIT is a single node a...2648 days ago
Awesome perl frameworks, libraries and software - PART 1
...t for monitoring MySQL servers rizen/Facebook-Graph - A perl module to help navigate the intricacies of the Facebook Graph API. lhost/sendxmpp - p...etiker/mrtg - MRTG - Multi Router Traffic Grapher monitoring-plugins/monitor...2451 days ago
2313 days ago
Run miniasm assembler on nanopore reads !
...p;de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format....2292 days ago