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Results for "grep"

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• • Jit@jit.aber

  

  Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence

  Tags: Linux, grep, Count, Number, Occurrence

  3601 days ago

• • Shruti Paniwala@shruti

  

  Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both #grep #Linux #Tricks #Lines #Matches

  Tags: grep, Linux, Tricks, Lines, Matches

  2706 days ago

• • Shruti Paniwala@shruti

  

  Extract values : cat seeALN.xls | grep -w "scaffold_1" to #grep #exact #matching words from file seeALN.xls

  Tags: grep, exact, matching

  2623 days ago

• • Jit@jit.aber

  

  To count number of fasta entries, I use: grep -c '^>' mySequences.fasta #Perl #Count #Number #Fasta #Linux #Grep

  Tags: Perl, Count, Number, Fasta, Linux, Grep

  3561 days ago

• • Rahul Nayak@rahul

  

  Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

  Tags: Fastaq, Count, Number, Grep, Dirty, Oneliner, NGS

  3145 days ago

• • Shruti Paniwala@shruti

  

  Grep all the processor in Linux system $ grep "^processor" /proc/cpuinfo | tail -n 1 | awk '{print $3}' #Grep #OS #Linux #Processor

  Tags: Grep, OS, Linux, Processor

  2866 days ago

• • Abhimanyu Singh@abhimanyu

  

  Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt #Linux #Tricks #View #Grep

  Tags: Linux, Tricks, View, Grep

  2544 days ago

• • Jit@jit.aber

  

  Linux command to find the file contains a string "LOCK_EX": grep -Ril "LOCK_EX" / #Root #Find #Linux #Grep #search

  Tags: Root, Find, Linux, Grep, search

  2334 days ago

• • Rahul Nayak@rahul

  

  Grep a term from a file in Linux. $ grep -A1 "term" input.fasta > output.fasta #Grep #Term

  Tags: Grep, Term

  1583 days ago