Results for "gz"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...wnload. In this example, let us search, download and install XML::Parser Perl module. I have downloaded the XML-Parser-2.36.tar.gz to /home/download# cd /home/download# gzip -d XML-Parser-2.36.tar.gz#...3940 days ago
- ...e.com/p/google-desktop-for-linux-mirror/downloads/detail?name=jpeg-6b.tar.gz&can=2&q)Download GD (http://search.cpan.org/~lds/GD-2.46/)Place the "tar.gz" files in "/SourceCache" and...
3930 days ago
Installing Perl environment on Linux
...L5LIB="$HOME/.plenv/build/perl-5.18.1/lib" Install BioPerl and PerlIO::gzip CPANMinus is a very good P...seful modules: $ cpanm Bio::Perl $ cpanm Bio::SearchIO $ cpanm PerlIO::gzip For more information, plea...2312 days ago
BBTools for bioinformatician !
...les Code: $ repair.sh in1=r1.fq.gz in2=r2.fq.gz out1=fixed1.fq.gz out2=fixed2...axinsert=4500 bell perfect=1 q=35 out=jump.fq.gz --------------------------...nce files Code: $ testformat.sh in=seq.fq.gz sanger fastq gz int...2261 days ago
Basic command-line to run BLAST
...wget ftp://ftp.ncbi.nih.gov/refseq/B_taurus/mRNA_Prot/cow.1.protein.faa.gz wget ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.1.protein.faa.gz This is only the first...2234 days ago
- ...m one build to another (3) Convert both genome position and dbSNP rs number over different versions Run: liftOver input.bed hg18ToHg19.over.chain.gz output.bed unlifted.bed The...
2150 days ago
Install ImageMagick from Unix Source
...ly almost all modern Unix systems have one. Download ImageMagick.tar.gzfrom www.imagemagick.org&...st. Unpack the distribution with this command: tar xvzf ImageMagick.tar.gz Next configure and compile...2136 days ago
- ...yrnaseq-Trinity-v2.6.6/trinity-plugins' tar xvf seqtk-trinity.v0.0.2.tar.gz seqtk-trinity-0.0.2/ seqtk-...seqtk-trinity-0.0.2/seqtk-trinity ./BIN/. tar -zxvf "ParaFly-0.1.0".tar.gz && \ cd "ParaFly-0.1...
2124 days ago
CANU genome assembly parameters !
...=false \ [other-options] \ read_file.fastq.gz A default Canu r...ads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz There is a brilliant se...1935 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...f the protocol is to explain the method of assembling the reads trimmed by quality into draft contigs. spades.py -1 illumina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -...1195 days ago
