Results for "gz"
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Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good computer, biology and related tutorials. Introducti...3115 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ssreads) Input: raw NGS datasets; fasta, fastq, gzipped or not; no reference ge...ide own fasta file for hg19 genome, Output: vcf.gz, vtf.gz, and baf.tsv.gz outpu...rdquo; Input: VCF BioR-Supported Catalogs (tar-gzip files): dbSNP, 1000 genomes...2894 days ago
- ...Illumina format) bam (if samtools is installed) gzip zip ascii-33 (sanger) ascii...to ensure reads are treated as pairs) Pipe in a gzipped sam file and pipe out fa...to 70 characters: reformat.sh -Xmx2g in=HG19.fa.gz out=HG19_wrapped.fa.gz fastaw...
2699 days ago
- ....tar containing files tar xf file.tar — extract the files from file.tar tar czf file.tar.gz files — create a tar with Gzip compression &nbs...
2859 days ago
Awesome perl frameworks, libraries and software - PART 1
...l-net-sdp - Perl Module : Session Description Protocol (rfc2327) songzan/perl5-doc - Perldoc He...ractical, reusable scripts for bioinformatics mozilla-bteam/bmo - bugzilla.mozilla.org source jamad...2474 days ago
- ...int --restart-from <cp> restart run with updated options and from the specified check-point ('ec', 'as', 'k<int>', 'mc') --disable-gzip-output forces error corre...
2336 days ago
- ...[-o] is not specified (and output goes to STDOUT), report will be printed to STDERR. [-z] = Compress output with GZIP. [-i INFILE] = FAS...
2290 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...dash; create a tar named file.tar containing files tar xf file.tar — extract the files from file.tar tar czf file.tar.gz files — create a tar with Gzip compression tar xzf file.ta...2265 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...835 days ago
- ...sample.bam > sample.unmapped.sam To gzip all your fastq files using gnu parallel and gzip: parallel gzip ::: *.fastq...c -l | awk '{d=\$1; print d/4;}'" ::: *.gz To count reads in a all .fas...ctly into makeblastdb. gunzip -c fasta.gz | makeblastdb -in - To remov...
2202 days ago
