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• • Rahul Nayak@rahul

  

  Download the human genome hg19 wget --timestamping 'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/chr*.fa.gz' #Human #Genome #Download #UCSC

  3686 days ago

• • Neelam Jha@neelam

  

  zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

  3630 days ago

• • Rahul Agarwal@raag

  

  iRNA-seq !! http://bioinformatik.sdu.dk/solexa/webshare/iRNA/iRNA-v1.0-script.tar.gz #RNA-Seq

  3376 days ago

• • Jit@jit.aber

  

  #Download #blastDB #locally. $ wget "ftp://ftp.ncbi.nlm.nih.gov/blast/db/nt.*.tar.gz" for NT and wget "ftp://ftp.ncbi.nlm.nih.gov/blast/db/nr.*.tar.gz" for NR

  2607 days ago

• • Abhimanyu Singh@abhimanyu

  

  Augustus 3.2 location https://fossies.org/linux/misc/augustus-3.2.3.tar.gz/ #Genes #Augustus #Predict

  2541 days ago

• • Jit@jit.aber

  

  Latest Augustus tool https://fossies.org/linux/misc/augustus-3.2.3.tar.gz/ #Tool #Prediction #Augustus

  2536 days ago

• • Jit@jit.aber

  

  A #parallel implementation of #gzip for modern #multi-processor, #multi-core machines http://zlib.net/pigz/

  2536 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  2485 days ago

• • Rahul Agarwal@raag

  

  https://docs.python.org/2/library/gzip.html#module-gzip #gzip #python

  2203 days ago

• • biogeek@biogeek

  

  (grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

  1520 days ago