Results for "gz"
Users
About me: I am student of B.tech (Biotech). My interest in reading technology Magzine.2489 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...wnload. In this example, let us search, download and install XML::Parser Perl module. I have downloaded the XML-Parser-2.36.tar.gz to /home/download# cd /home/download# gzip -d XML-Parser-2.36.tar.gz#...3934 days ago
- ...e.com/p/google-desktop-for-linux-mirror/downloads/detail?name=jpeg-6b.tar.gz&can=2&q)Download GD (http://search.cpan.org/~lds/GD-2.46/)Place the "tar.gz" files in "/SourceCache" and...
3923 days ago
- +9 more Blogs
Bookmarks
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq different...
3637 days ago
- ...variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gzFor other versions, see "relea...
2971 days ago
- +29 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 4
...atrol - Edge-authentication ipfire/ipfire-2.x - IPFire 2.x development tree dgl/cpangrep - Search code on CPAN with Regexps bugzilla/bugzilla - Read-only mirror o...2478 days ago
Top-level pages
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good computer, biology and related tutorials. Introducti...3114 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ssreads) Input: raw NGS datasets; fasta, fastq, gzipped or not; no reference ge...ide own fasta file for hg19 genome, Output: vcf.gz, vtf.gz, and baf.tsv.gz outpu...rdquo; Input: VCF BioR-Supported Catalogs (tar-gzip files): dbSNP, 1000 genomes...2892 days ago
- +13 more Top-level pages
Wire posts
News
- ...(codename “Full of Ingredients”) was released yesterday. You can get the latest binaries version from here. (or the .tar.gz source code from here).&...
3289 days ago
- ...0 (codename “Supposedly Educational”) was released today. You can get the latest binaries version from here. (or the .tar.gz source code from here).&...
2907 days ago
- +3 more News
Opportunity posts
Visiting Scientist - Computational Genomics (two positions)
...dged, however only short listed candidates will be contacted. Apply here https://recruit.zoho.com/ats/Portal.na?digest=T642sgLYWZOStExJ77cPrcM*sIMGZETWw4yPxngbmHA-3573 days ago
Faculty post at Zhejiang University
...ge areas of the relevant field at ZJU. As one of the leading research-intensive universities in China, ZJU is located in the beautiful city of Hangzhou. Successful candidates wil...3601 days ago
Video
Genomics and Personalized Medicine Breakthroughs
http://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now identify...3609 days ago
Bio-Scripts
Extract ids from file with perl
...#################################### #Open and Read a file sub read_fh { my $filename = shift @_; my $filehandle; if ($filename =~ /gz$/) { open $filehandl...2592 days ago
Download the genome from NCBI using bash script/command
...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_fungi # -...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_bacteria...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_protozoa...2516 days ago
- +48 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research inter...2346 days ago
Groups
Web prgramming for biologist/bioinformatician
PHP is quite popular these days (in combination with mySQL (query and design db), CSS (for styling) and HTML) for web programming and online database management for p...3620 days ago
Tags
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored is increasing rapidly, but the actual amount of new data is very small. In other words, a single DNA sequence isn't particular...
Tags: data compression, genomics, sequencing, redundancy, repeats, bam, sff, gz, zip
3904 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...va-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ | gzip -1 > ./minimap.paf.gz miniasm -f \ ../../trim...780 days ago
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/902 days ago
- +20 more Comments
