Results for "gz"
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Comment on "Run miniasm assembler on nanopore reads !"
...va-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ | gzip -1 > ./minimap.paf.gz miniasm -f \ ../../trim...781 days ago
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/903 days ago
Comment on "Download desire version of Blast software !"
Blast v2.12 wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.12.0+-x64-linux.tar.gz927 days ago
Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta930 days ago
Comment on "URMAP, an ultra-fast read mapper"
...A file for the reference is not needed. Reads must be in FASTQ format or gzip-compressed FASTQ format. It...ing -map. Use "-" (minus sign) to get input from a pipe. If the reads are gzip-compressed, the filename mu...1268 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...first thing we need to do is to combine the reads into a single file, for gzipped files, this can be done...$ cat reads_R1.fastq >> combined.fastq $ zcat reads_R2.fastq.gz >> combined.fastq...1322 days ago
- ...p;and -s options, and list any number of FASTQ files, e.g kallisto quant -i index -o output --single -l 200 -s 20 file1.fastq.gz file2.fastq.gz file3.fastq.gz FASTQ f...
1346 days ago
Comment on "Setting up autoConTAMPR !"
...? (This means connecting to the Internet) [yes] yesFetching with LWP:http://espejito.fder.edu.uy/cpan/authors/01mailrc.txt.gzReading '/root/.cpan/sources/authors/01mailrc.txt.gz'................................1427 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
...v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz--2020-02-03 11:05:58-- ...v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gzResolving github.com (github.c...name%3Dngmlr-0.2.7-linux-x86_64.tar.gz&response-content-type=app...name%3Dngmlr-0.2.7-linux-x86_64.tar.gz&response-content-type=app...1538 days ago
Comment on "The Raku Programming Language"
Install Raku wget https://rakudo.perl6.org/downloads/star/rakudo-star-2019.03.tar.gz tar xfz rakudo-star-2019.03.tar.gz cd rakudo-star-2019.03 perl Configure.pl --gen-moar --make-install --prefix ~/rakudo say 'Hello World'; # Hello World1544 days ago
