Results for "haplotype"
Blogs
Computer simulation of genetic mechanism !!
...istasis, linkage disequilibrium patterns and haplotype blocks for genome-wide intera...apSim A simulation tool for generating haplotype data with pre-specified allel...imPed A Simulation Program to Generate Haplotype and Genotype Data for Pedigre...2958 days ago
Tools and Method for Haplotype phasing !
...ned in these results, however, is best exploited through phased haplotypes, which classify the alleles...es not specifically observe which of the two parental chromosomes, or haplotypes, falls on a specific allele....1321 days ago
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Bookmarks
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...ectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the o...1079 days ago
- ...lgorithm is: S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81...
2730 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...cle-Basis Algorithm for Accurate Haplotype AssemblyHapCompass for p...COMPASS will assemble reads into haplotypes. GAM-NGS 1.1b – Genom...ndash; Short Reads Assembly into HaplotypesShoRAH is a software pac...and SOLiD. hapAssembly – Haplotype Assembly from Whole-Genome Se...2668 days ago
Bioinformatics in Africa: Part7 - Tunisia
...;signal transduction pathways and statistical analysis of human sequence variation data (haplotype reconstruction and...1166 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...s_software/hapgen/hapgen2.htmlHapSim A simulation tool for generating haplotype data with pre-specified allel...http://www2.unil.ch/popgen/softwares/quantinemo/RECOAL Simulates new haplotype data from a reference populat...3720 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...opulation; Fairly popular Input: Reference Haplotypes: Links to 1000 Genomes and H..., MNPs; reports variants based on alignment; haplotype based Input: BAM- uses BAMto...k, Pathway Association Analysis, Genome-wide Haplotype Analysis, Input: PLINK input...2891 days ago
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Wire posts
News
Phased Human Genome Assembly !
...;System. Using the FALCON-Unzip assembler, maternal and paternal haplotypes were resolved over more than 80% of the genome. Maternal and paternal haplotype blocks were then further phas...2019 days ago
Bio-Scripts
Bash script to simulate a genome !
...grep -v "^#"|wc -l # 2830139 # ~2% het rate # get only 1 haplotype from the "diploid" reference...bgzip -@75 \ > GCA_003401745.1_ASM340174v1_genomic.fna_upper.diploid.haplotype0.fasta.gz # make ref...900 days ago
Tags
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole in the fat primarily cause boar taint. Metabolism of androstenone and sex steroids share a common pathway which makes ...Tags: Sequencing, DNA, Whole genome re-sequencing, Boar taint, androstenone, skatole, pig, QTL, SNP, haplotype, fine mapping, SSC
3772 days ago
